PIPseeker™ Software for Single Cell Data Analysis

  • Analyze sequencing data from Illumina 3′ Single Cell RNA Prep Gene Expression libraries
  • Obtain summary metrics, diagnostic plots, clustering and differential gene expression tables
  • Generate standard feature-barcode count matrices compatible with standard tertiary analysis packages
  • Compatible with Linux, macOS, and Windows
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Downloads

PIPseeker is available for download as a self-contained package. Common reference packages are also provided in the downloads page, and users can generate their own references as needed.

PIPseeker User Guide (PDF)

DOWNLOADS PAGE